PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.RM65A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 553aa    MW: 61577.4 Da    PI: 9.5101
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.RM65AgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.91.2e-10244302255
                  HHHHHHHHHHHHHHHHHH.........HHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   2 rrahnerErrRRdriNsa.........feeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  r +h++ E+rRR++iN++         f+ Lrel+P++    ++K +Ka+ L +++eYI+ Lq
  Araip.RM65A 244 RSKHSATEQRRRSKINDRrvlpilhkiFQMLRELIPHS----DQKRDKASFLLEVIEYIHFLQ 302
                  889**************88888888889*********9....9******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.1E-21239324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-14240323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.37E-12244306No hitNo description
PfamPF000102.9E-8244302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-6248307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.064251301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MMELPQARSF GTEGRKPTHD FLSLYSNSTS QQDPRPPSQG SYLKTHDFLR VETKANTKEE  60
ASDETSSTVQ KLPPAAPQPP PSVEHHQHLL PGGIAMKTPT AVLIPQVVSL YGMSLQLRRE  120
RQGRRIILWA TSLFPEASPR ADGSINLETQ SAKQGHWTST EGTPQSFSNN RHNSFNSRSS  180
SQTTGQRNQS FIEMMKSAKD CAQDEELDNE ETYFLKKESS NPERAELRVK VDGKSSDQKP  240
NTPRSKHSAT EQRRRSKIND RRVLPILHKI FQMLRELIPH SDQKRDKASF LLEVIEYIHF  300
LQEKVHKYEG SFQGWNHEPE KLMPWRNNDK PAESFEACGT NSGSGPSPTL LFASKIDEKN  360
ITLSPPITGS SQKLEPGLNT ATPFKNMDHP PGITNNTFPI PISSPPNFFP PRKSIGLGEM  420
PHVTHRLPSD AGNGIYQPSV ECQTVTATNE KLKEKELAIE GGAISISSVY SKGLLDTLTH  480
ALQSSGVDLS QASISVQIEL RKQENIIRPT LPMSMCGIKG DEVPSNNQRM MRSRVATSGK  540
SDQPVKKLKS CKT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150347e-33AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016193687.10.0PREDICTED: transcription factor BIM1-like, partial
TrEMBLA0A0B2QEC90.0A0A0B2QEC9_GLYSO; Transcription factor BIM1
TrEMBLI1MT980.0I1MT98_SOYBN; Uncharacterized protein
STRINGGLYMA17G08980.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72523145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.42e-77bHLH family protein